\name{Layout-class}
\docType{class}
\alias{Layout-class}
\alias{additionalGraphicalObjects,Layout-method}
\alias{additionalGraphicalObjects}
\alias{additionalGraphicalObjects<-,Layout-method}
\alias{additionalGraphicalObjects<-}
\alias{compartmentGlyphs,Layout-method}
\alias{compartmentGlyphs}
\alias{compartmentGlyphs<-,Layout-method}
\alias{compartmentGlyphs<-}
\alias{dimensions,Layout-method}
\alias{dimensions}
\alias{dimensions<-,Layout-method}
\alias{dimensions<-}
\alias{reactionGlyphs,Layout-method}
\alias{reactionGlyphs}
\alias{reactionGlyphs<-,Layout-method}
\alias{reactionGlyphs<-}
\alias{speciesGlyphs,Layout-method}
\alias{speciesGlyphs}
\alias{speciesGlyphs<-,Layout-method}
\alias{speciesGlyphs<-}
\alias{textGlyphs,Layout-method}
\alias{textGlyphs}
\alias{textGlyphs<-,Layout-method}
\alias{textGlyphs<-}
\alias{id,Layout-method}
\alias{id<-,Layout-method}

\title{SBML type "Layout"}
\description{Contains the glyphs and other graphical objects that compose an SBML layout.
Layouts are not part of the core SBML specification. See the reference for the 
SBML layout extension specification.}
\section{Instantiation}{
Objects can be created by calls of the form \code{new("Layout", ...)}.
}
\section{Slots}{
	 \describe{
    \item{\code{id}:}{Object of class \code{"character"} uniquely
    identifying this component. } \item{\code{dimensions}:}{Object of
    class \code{"Dimensions"} specifing the size of the layout.}
    \item{\code{compartmentGlyphs}:}{Object of class \code{"list"}
    containing the \code{\linkS4class{CompartmentGlyph}}s. The names of
    the list correspond to the IDs of the elements. }
    \item{\code{speciesGlyphs}:}{Object of class \code{"list"}
    containing the \code{\linkS4class{SpeciesGlyph}}s. The names of the
    list correspond to the IDs of the elements. }
    \item{\code{reactionGlyphs}:}{Object of class \code{"list"}
    containing the \code{\linkS4class{ReactionGlyph}}s. The names of the
    list correspond to the IDs of the
    elements. } \item{\code{textGlyphs}:}{Object of class \code{"list"}
    containing the \code{\linkS4class{TextGlyph}}s. The names of the
    list correspond to the IDs of the
    elements.}  \item{\code{additionalGraphicalObjects}:}{Object of
    class \code{"list"} containing the
    additional \code{\linkS4class{GraphicalObject}}s that are not bound
    to any model component.  The names of the list correspond to the IDs
    of the elements. } \item{\code{metaId}:}{Object of
    class \code{"character"} that is an XML ID "described" by an RDF
    resource. This links an SBML element to an RDF resource. RDF may
    appear anywhere in an SBML element, but is usually placed inside
    the \code{annotation} element.}
    \item{\code{notes}:}{Object of class \code{"character"} 
      containing user-readable XHTML notes about an element. }
    \item{\code{annotation}:}{Object of class \code{"character"} containing
      additional machine-readable information about an element, usually as RDF,
      such as BioPAX. This is where application-specific data belongs.}
    \item{\code{cvTerms}:}{Object of class \code{"list"} containing
      instances of \code{\linkS4class{CVTerm}} associated with this
      element.}
    \item{\code{sboTerm}:}{Object of class \code{"integer"} identifying
      a term in the Systems Biology Ontology (SBO).}
  }
}
\section{Extends}{
Class \code{"\linkS4class{SBase}"}, directly.
}
\section{Methods}{
  \describe{
    \item{id}{\code{signature(object = "Layout")}: gets the \code{id} slot }
    \item{id<-}{\code{signature(object = "Layout")}: sets the \code{id} slot }
    \item{additionalGraphicalObjects}{\code{signature(object = "Layout")}: gets the \code{additionalGraphicalObjects} slot }
    \item{additionalGraphicalObjects<-}{\code{signature(object = "Layout")}: sets the \code{additionalGraphicalObjects} slot }
    \item{compartmentGlyphs}{\code{signature(object = "Layout")}: gets the \code{compartmentGlyphs} slot }
    \item{compartmentGlyphs<-}{\code{signature(object = "Layout")}: sets the \code{compartmentGlyphs} slot }
    \item{dimensions}{\code{signature(object = "Layout")}: gets the \code{dimensions} slot }
    \item{dimensions<-}{\code{signature(object = "Layout")}: sets the \code{dimensions} slot }
    \item{reactionGlyphs}{\code{signature(object = "Layout")}: gets the \code{reactionGlyphs} slot }
    \item{reactionGlyphs<-}{\code{signature(object = "Layout")}: sets the \code{reactionGlyphs} slot }
    \item{speciesGlyphs}{\code{signature(object = "Layout")}: gets the \code{speciesGlyphs} slot }
    \item{speciesGlyphs<-}{\code{signature(object = "Layout")}: sets the \code{speciesGlyphs} slot }
    \item{textGlyphs}{\code{signature(object = "Layout")}: gets the \code{textGlyphs} slot }
    \item{textGlyphs<-}{\code{signature(object = "Layout")}: sets the \code{textGlyphs} slot }
	 }
}
\references{\url{http://projects.villa-bosch.de/bcb/sbml}}
\author{Michael Lawrence}
\keyword{classes}