\name{getKegg} \alias{getKegg} \title{ Create a list of gene sets based on KEGG pathways terms. } \description{ This function creates a list of gene sets based on KEGG pathways terms. It is species-specific, and returns a list of gene sets, each of which is a character vector of Entrez gene identifiers. This function is a wraper to the function \code{KeggGeneSets} from package \code{HTSanalyzeR}. } \usage{ getKegg(species = "Dm") } %- maybe also 'usage' for other objects documented here. \arguments{ \item{species}{ a single character value specifying the species: "Dm" ("Drosophila_ melanogaster"), "Hs" ("Homo_sapiens"), "Rn" ("Rattus_norvegicus"), "Mm" ("Mus_musculus") or "Ce" ("Caenorhabditis_elegans")).} } \details{ This function relies on the following packages: GSEABase, KEGG.db. } \value{ a list of gene sets, with names as KEGG pathway IDs. Each gene set is a character vector of Entrez gene identifiers. } \author{ Evarist Planet. } \seealso{ getGo } \examples{ #library(KEGG.db) #library(org.Hs.eg.db) #kegg.Hs <- getKegg('Hs') #str(kegg.Hs) #kegg.Hs[1:2] } \keyword{ ~kwd1 }