\name{plot.subnet}
\alias{plot.subnet}
\title{plot.subnet}
\description{Plot the given subnetwork.}
\usage{
\method{plot}{subnet}(x, subnet.id, network, plot.names = TRUE, \dots)
}
\arguments{
  \item{x}{Result from NetResponse (detect.responses function). }
  \item{subnet.id}{Subnet id. }
  \item{network}{Original network used in the modelling.}
  \item{plot.names}{Plot node names (TRUE) or indices (FALSE).}
  \item{...}{Further arguments for plot function.}  
}
\value{ Used for its side-effects. Returns a matrix that describes the
  investigated subnetwork. }
\references{L. Lahti et al.: Global modeling of transcriptional responses in interaction networks. Submitted.}
\author{Leo Lahti, Olli-Pekka Huovilainen and Antonio Gusmao.
Maintainer: Leo Lahti <leo.lahti@iki.fi>}
\examples{
# res <- detect.responses(D, netw, verbose = FALSE)
# net <- plot.subnet(res, subnet.idx = 1)
}
\keyword{utilities}