\name{qaProcess.KLDistPlot} \alias{qaProcess.KLDistPlot} \title{ Creates a QA process for comparisons of KL Distances across multiple samples } \description{ This function takes a list of \code{\link[flowCore:flowSet-class]{flowSet}} as input and creates all necessary outputs for an 'KLDistPlot' type of QA process. Objects created by this function can be laid out as HTML using \code{\link[flowQ]{writeQAReport}}. } \usage{ qaProcess.KLDistPlot(flowList,dyes=NULL,outdir="QAReport", alpha=0.05, absolute.value=NULL,sum.dimensions=NULL, det.dimensions=NULL, pdf=TRUE, name="KLDist",...) } \arguments{ \item{flowList}{ A list of \code{\link[flowCore:flowSet-class]{flowSet}} } \item{dyes}{Flow parameters to be compared across multiple samples. If set to NULL, all parameters that are duplicated across the list of \code{\link[flowCore:flowSet-class]{flowSet}} are identified and compared.} \item{outdir}{ The directory to which the graphical output is to be saved. If multiple QA processes are to be combined, make sure to use the same directory every time. } \item{alpha}{Outlier mislabeling rate} \item{absolute.value}{If provided, the absolute.value is used for the outlier detection and the alpha argument is ignored. defualt is NULL} \item{sum.dimensions}{The dimensions of summary plot generated in inches, default is NULL where the dimensions are automatically selected} \item{det.dimensions}{the dimensions of each sub image generated by the QA process in inches, default is NULL where the dimensions are automatically selected.} \item{pdf}{boolen value determinining if pdf files or jpeg images will be produced by the QA process} \item{name}{The name of the process used for the headings in the HTML output.} \item{...}{Further arguments.} } \details{ QA processes of type 'KLDistPlot' detects differences in the pairwise KL Distances of the flow parameters across multiple samples. For more details on how to layout \code{\link[flowQ:qaProcess-class]{qaProcess}} objects to HTML, see \code{\link[flowQ]{writeQAReport}} and \code{\link[flowQ]{qaReport}}. } \value{ An object of class \code{\link[flowQ:qaProcess-class]{qaProcess}}. } \author{ Nishant Gopalakrishnan } \seealso{ \code{\link[flowQ]{writeQAReport}}, \code{\link[flowQ]{qaReport}}, \code{\link[flowQ:qaProcess-class]{qaProcess}}, \code{\link[flowQ]{qaProcess.DensityPlot}} \code{\link[flowQ]{qaProcess.2DStatsPlot}} \code{\link[flowQ]{qaProcess.BoundaryPlot}} } \examples{ data(qData) dest <- tempdir() resKLdist <- qaProcess.KLDistPlot(qData, dyes=c("SSC-A","FSC-A"), outdir=dest, alpha=0.05, pdf=TRUE) resKLdist %writeQAReport(qData[[1]], list(resKLdist), outdir=dest) } \keyword{ dynamic }