\name{INI_Calls-class} \title{Class INI_Calls} \docType{class} \alias{INI_Calls} \alias{INI_Calls-class} \description{This is a class representation for an \code{INI_calls-class} object. The \code{INI_calls-class} consists of two instances of \code{\link[Biobase]{exprSet-class}}, containing an informative \code{exprSet} and a non-informative \code{exprSet}. } \section{Objects from the Class}{ Objects can be created using the function \code{\link{INIcalls}}. } \section{Slots}{ \describe{ \item{\code{I_Calls}:}{Object of class \code{"vector"} containing informative probe set names.} \item{\code{NI_Calls}:}{Object of class \code{"vector"} containing non-informative probe set names.} \item{\code{I_Exprs}:}{Object of class \code{exprSet-class} representing the informative \code{exprSet}.} \item{\code{NI_Exprs}:}{Object of class \code{exprSet-class} representing the non-informative \code{exprSet}.} \item{\code{varZX}:}{Object of class \code{"vector"} containing the INI-call value.} } } \seealso{\code{\link{expFarms}}, \code{\link{qFarms}},\code{\link{lFarms}},\code{\link{INIcalls}}} \examples{ data(testAffyBatch) eset <- expFarms(testAffyBatch, bgcorrect.method = "none", pmcorrect.method = "pmonly", normalize.method = "constant") INIs <- INIcalls(eset) # apply I/NI calls summary(INIs) plot(INIs) # draws a density plot of I/NI-calls I_data <- getI_Eset(INIs) # affybatch containing only informative probe sets NI_data <- getNI_Eset(INIs) # affybatch containing only non-informative probe sets I_probes <- getI_ProbeSets(INIs) # vector containing only informative probe sets names NI_probes <- getNI_ProbeSets(INIs) # vector containing only non-informative probe sets names } \author{Djork Clevert} \keyword{classes}