\name{compareCluster}
\alias{compareCluster}
\title{Compare gene clusters functional profile
Given a list of gene set, this function will compute profiles of each gene
cluster.}
\usage{
  compareCluster(geneClusters, fun = "enrichGO", ...)
}
\arguments{
  \item{geneClusters}{a list of entrez gene id.}

  \item{fun}{One of "groupGO", "enrichGO", "enrichKEGG",
  "enrichDO" or "enrichPathway" .}

  \item{...}{Other arguments.}
}
\value{
  A \code{clusterProfResult} instance.
}
\description{
  Compare gene clusters functional profile Given a list of
  gene set, this function will compute profiles of each
  gene cluster.
}
\examples{
data(gcSample)
	xx <- compareCluster(gcSample, fun="enrichKEGG", organism="human", pvalueCutoff=0.05)
	#summary(xx)
	#plot(xx, type="dot", caption="KEGG Enrichment Comparison")
}
\author{
  Guangchuang Yu \url{http://ygc.name}
}
\seealso{
  \code{\link{compareClusterResult-class}},
  \code{\link{groupGO}} \code{\link{enrichGO}}
}
\keyword{manip}