%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Do not modify this file since it was automatically generated from: % % ./getSubtype.NCIgraph.R % % by the Rdoc compiler part of the R.oo package. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \name{getSubtype.NCIgraph} \alias{getSubtype.NCIgraph} \title{Returns a list of @KEGGEdgeSubType objects describing each edge of the NCI network} \description{ Returns a list of @KEGGEdgeSubType objects describing each edge of the NCI network. } \usage{getSubtype.NCIgraph(object)} \arguments{ \item{object}{An \code{\link[=NCIgraph-class]{NCIgraph}} object.} } \value{A \code{\link[base]{list}} of KEGGEdgeSubType objects.} \author{Laurent Jacob} \examples{ ##------------------------------ ## Load NCIgraph ##------------------------------ library(NCIgraph) ##------------------------------ ## Get some raw networks ##------------------------------ data("NCIgraphVignette", package="NCIgraph") ##------------------------------ ## Parse them ##------------------------------ grList <- getNCIPathways(cyList=NCI.demo.cyList, parseNetworks=TRUE, entrezOnly=TRUE, verbose=TRUE)$pList ##---------------------------------------------------------------- ## ## Get the subtype of the second network. Some activation and some ## inhibition edges. ## ##---------------------------------------------------------------- getSubtype.NCIgraph(grList[[2]]) }