\name{getGademPWM} \alias{getGademPWM} \title{Recover PWM } \description{ This function selects the PWMs contained in an object of type \code{gadem}.} \usage{ getGademPWM(y) } \arguments{ \item{y}{A \code{gadem} object.} } \value{A list of PWM.} \author{Eloi Mercier <\email{emercier@chibi.ubc.ca}>} \examples{ #####Database and Scores##### path <- system.file(package="MotIV") jaspar <- readPWMfile(paste(path,"/extdata/jaspar2010.txt",sep="")) jaspar.scores <- readDBScores(paste(path,"/extdata/jaspar2010_PCC_SWU.scores",sep="")) #####Input##### data(FOXA1_rGADEM) # motifs <- getGademPWM(gadem) #depreciated motifs <- getPWM(gadem) motifs.trimed <- trimPWMedge(motifs, threshold=1) } \keyword{misc}