\name{ex} \alias{ex} \docType{data} \title{ ExpressionSet instance for illustrating integrative smlSet container } \description{ ExpressionSet instance for illustrating integrative smlSet container } \usage{data(eset)} \format{ The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots \cr .. .. ..@ name : chr "" \cr .. .. ..@ lab : chr "" \cr .. .. ..@ contact : chr "" \cr .. .. ..@ title : chr "" \cr .. .. ..@ abstract : chr "" \cr .. .. ..@ url : chr "" \cr .. .. ..@ pubMedIds : chr "" \cr .. .. ..@ samples : list() \cr .. .. ..@ hybridizations : list() \cr .. .. ..@ normControls : list() \cr .. .. ..@ preprocessing : list() \cr .. .. ..@ other : list() \cr .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots \cr .. .. .. .. ..@ .Data:List of 2 \cr .. .. .. .. .. ..$ : int [1:3] 1 0 0 \cr .. .. .. .. .. ..$ : int [1:3] 1 1 0 \cr ..@ assayData : \cr ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots \cr .. .. ..@ varMetadata :'data.frame': 7 obs. of 1 variable: \cr .. .. .. ..$ labelDescription: chr [1:7] "hapmap family id" "hapmap person id" "id of mother of this person" "id of father of this person" ... \cr .. .. ..@ data :'data.frame': 90 obs. of 7 variables: \cr .. .. .. ..$ famid : int [1:90] 1341 1341 1341 1340 1340 1340 1340 1340 1341 1341 ... \cr .. .. .. ..$ persid : int [1:90] 14 2 13 9 10 2 11 1 11 1 ... \cr .. .. .. ..$ mothid : int [1:90] 0 14 0 0 0 12 0 10 0 12 ... \cr .. .. .. ..$ fathid : int [1:90] 0 13 0 0 0 11 0 9 0 11 ... \cr .. .. .. ..$ sampid : Factor w/ 90 levels "NA06985","NA06991",..: 1 2 3 4 5 6 7 8 9 10 ... \cr .. .. .. ..$ isFounder: logi [1:90] TRUE FALSE TRUE TRUE TRUE FALSE ... \cr .. .. .. ..$ male : logi [1:90] FALSE FALSE TRUE TRUE FALSE FALSE ... \cr .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" \cr .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots \cr .. .. .. .. ..@ .Data:List of 1 \cr .. .. .. .. .. ..$ : int [1:3] 1 1 0 \cr ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots \cr .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: \cr .. .. .. ..$ labelDescription: chr(0) \cr .. .. ..@ data :'data.frame': 47293 obs. of 0 variables \cr .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" \cr .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots \cr .. .. .. .. ..@ .Data:List of 1 \cr .. .. .. .. .. ..$ : int [1:3] 1 1 0 \cr ..@ annotation : chr "illuminaHumanv1.db" \cr ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots \cr .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: \cr .. .. .. ..$ labelDescription: chr(0) \cr .. .. ..@ data :'data.frame': 90 obs. of 0 variables \cr .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" \cr .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots \cr .. .. .. .. ..@ .Data:List of 1 \cr .. .. .. .. .. ..$ : int [1:3] 1 1 0 \cr ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots \cr .. .. ..@ .Data:List of 4 \cr .. .. .. ..$ : int [1:3] 2 14 0 \cr .. .. .. ..$ : int [1:3] 2 13 7 \cr .. .. .. ..$ : int [1:3] 1 3 0 \cr .. .. .. ..$ : int [1:3] 1 0 0 \cr } \details{ Expression data harvested in 2007 from GENEVAR ftp://ftp.sanger.ac.uk/pub/genevar/CEU_parents_norm_march2007.zip } %\source{ %% ~~ reference to a publication or URL from which the data were obtained ~~ %} %\references{ %% ~~ possibly secondary sources and usages ~~ %} \examples{ data(eset) # yields ExpressionSet instance called ex } \keyword{datasets}