%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Do not modify this file since it was automatically generated from: % % ./getConnectedComponentList.R % % by the Rdoc compiler part of the R.oo package. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \name{getConnectedComponentList} \alias{getConnectedComponentList} \title{Given a graph, returns a list of its connected components (which are also graph objects), ordered by decreasing number of nodes} \description{ Given a graph, returns a list of its connected components (which are also graph objects), ordered by decreasing number of nodes. } \usage{getConnectedComponentList(graph, verbose=FALSE)} \arguments{ \item{graph}{A \code{\link[=graph-class]{graph}} object.} \item{verbose}{If \code{\link[base:logical]{TRUE}}, extra information is output.} } \value{ A \code{\link[base]{list}} containing a \code{\link[=graph-class]{graph}} object for each connected component of the input graph, ordered by decreasing number of nodes } \author{Laurent Jacob, Pierre Neuvial and Sandrine Dudoit} \seealso{\code{\link{connectedComp}}.} \examples{ data("Loi2008_DEGraphVignette") exprData <- exprLoi2008 rn <- rownames(exprData) ## Retrieve expression levels data for genes from one KEGG pathway graph <- grListKEGG[[1]] pname <- attr(graph, "label") cat(verbose, "Pathway name: ", pname) sgraph <- getSignedGraph(graph, verbose=TRUE) print(sgraph) graphList <- getConnectedComponentList(graph, verbose=TRUE) print(graphList) }