\name{sdf2smiles} \alias{sdf2smiles} %- Also NEED an '\alias' for EACH other topic documented here. \title{ \code{SDFset} to \code{character} Convert \code{SDFset} to SMILES (\code{character}) } \description{ Accepts one compound in an \code{SDFset} container and returns the corresponding SMILES string (Simplified Molecular Input Line Entry Specification). The compound is submitted to the ChemMine Tools web service for conversion with the Open Babel Open Source Chemistry Toolbox. If the input object contains multiple items, only the first is converted. } \usage{ sdf2smiles(sdf) } %- maybe also 'usage' for other objects documented here. \arguments{ \item{sdf}{ A \code{SDFset} object which contains one compound } } \value{ \item{character}{ for details see ?"character"} } \references{ Chemmine web service: http://chemmine.ucr.edu Open Babel: http://openbabel.org SMILES Format: http://en.wikipedia.org/wiki/Chemical_file_format#SMILES } \author{ Tyler Backman } \examples{ \dontrun{ ## get a sample compound data(sdfsample); sdfset <- sdfsample[1] ## convert to smiles smiles <- sdf2smiles(sdfset)} } \keyword{ utilities }