\name{enrichedGO} \alias{enrichedGO} \docType{data} \title{ Enriched Gene Ontology terms used as example } \description{ Enriched Gene Ontology terms used as example } \usage{data(enrichedGO)} \format{ A list of 3 variables. \describe{ \item{\code{bp}}{enriched biological process with 9 variables go.id:GO biological process id go.term:GO biological process term go.Definition:GO biological process description Ontology: Ontology branch, i.e. BP for biological process count.InDataset: count of this GO term in this dataset count.InGenome: count of this GO term in the genome pvalue: pvalue from the hypergeometric test totaltermInDataset: count of all GO terms in this dataset totaltermInGenome: count of all GO terms in the genome } \item{\code{mf}}{enriched molecular function with the following 9 variables go.id:GO molecular function id go.term:GO molecular function term go.Definition:GO molecular function description Ontology: Ontology branch, i.e. MF for molecular function count.InDataset: count of this GO term in this dataset count.InGenome: count of this GO term in the genome pvalue: pvalue from the hypergeometric test totaltermInDataset: count of all GO terms in this dataset totaltermInGenome: count of all GO terms in the genome } \item{\code{cc}}{enriched cellular component the following 9 variables go.id:GO cellular component id go.term:GO cellular component term go.Definition:GO cellular component description Ontology: Ontology type, i.e. CC for cellular component count.InDataset: count of this GO term in this dataset count.InGenome: count of this GO term in the genome pvalue: pvalue from the hypergeometric test totaltermInDataset: count of all GO terms in this dataset totaltermInGenome: count of all GO terms in the genome } } } \details{ } \source{ } \references{ } \author{ Lihua Julie Zhu } \note{ } \examples{ data(enrichedGO) dim(enrichedGO$mf) dim(enrichedGO$cc) dim(enrichedGO$bp) } \keyword{datasets}