\name{@ANNOBJPREFIX@ENSEMBLTRANS} \alias{@ANNOBJPREFIX@ENSEMBLTRANS} \alias{@ANNOBJPREFIX@ENSEMBLTRANS2ORF} \title{Map Ensembl transcript acession numbers with SGD Gene identifiers} \description{ @ANNOBJPREFIX@ENSEMBL is an R object that contains mappings between SGD Gene identifiers and Ensembl transcript accession numbers. } \details{ This object is a simple mapping of SGD Gene identifiers \url{ftp://genome-ftp.stanford.edu/pub/yeast/data_download} to Ensembl transcript accession numbers. Mappings were based on data provided by: \url{ftp://ftp.ensembl.org/pub/current_fasta} \url{ftp://genome-ftp.stanford.edu/pub/yeast/data_download} \url{ftp://ftp.ncbi.nlm.nih.gov/gene/DATA} } \examples{ x <- @ANNOBJPREFIX@ENSEMBLTRANS # Get the SGD gene IDs that are mapped to an Ensembl ID mapped_genes <- mappedkeys(x) # Convert to a list xx <- as.list(x[mapped_genes]) if(length(xx) > 0) { # Get the Ensembl gene IDs for the first five proteins xx[1:5] # Get the first one xx[[1]] } #For the reverse map ENSEMBLTRANS2ORF: # Convert to a list xx <- as.list(@ANNOBJPREFIX@ENSEMBLTRANS2ORF) if(length(xx) > 0){ # Gets the SGD gene IDs for the first five Ensembl IDs xx[1:5] # Get the first one xx[[1]] } } \keyword{datasets}