\name{write.agdex.gset.details} \alias{write.agdex.gset.details} \title{write the output of get.gset.result.details to a tab-delimited text file.} \description{A function to write an output file with detailed AGDEX gene-set result.} \usage{ write.agdex.gset.details(gset.details, out.file) } \arguments{ \item{gset.details}{ result produced by \emph{get.gset.result.details} } \item{out.file}{name of the output file} } \value{ the path and name of output file of the result of gene-level agdex analysis } \author{ Stan Pounds <\email{stanley.pounds@stjude.org}; Cuilan Lani Gao <\email{cuilan.gao@stjude.org}> } \seealso{ \code{\link{agdex}}; \code{\link{get.gset.result.details}}; \code{\link{read.agdex.gset.details}} } \examples{ # load the saved result run agdex routine data(agdex.res) # obtain all gene-set result gset.res.all <- get.gset.result.details(agdex.res,gset.ids = NULL, alpha=0.01) # obtain the gene set result of memember genes gset.res0 <- get.gset.result.details(agdex.res,gset.ids = "DNA_CATABOLIC_PROCESS", alpha=0.01) # write the gene set details to an output file \dontrun{ write.agdex.gset.details(gset.res0, "gset.details.txt") } }