@article{bourgon2010independent, title = {Independent filtering increases detection power for high-throughput experiments}, author = {Bourgon, Richard and Gentleman, Robert and Huber, Wolfgang}, journal = {Proceedings of the National Academy of Sciences}, volume = 107, number = 21, pages = {9546--9551}, year = 2010, publisher = {National Acad Sciences} } @article{ignatiadis2015data, title = {Data-driven hypothesis weighting increases detection power in big data analytics}, author = {Ignatiadis, Nikolaos and Klaus, Bernd and Zaugg, Judith B and Huber, Wolfgang}, journal = {bioRxiv}, pages = 034330, year = 2015, publisher = {Cold Spring Harbor Labs Journals} } @Article{ignatiadis2016natmeth, title = {Data-driven hypothesis weighting increases detection power in genome-scale multiple testing}, author = {Ignatiadis, Nikolaos and Klaus, Bernd and Zaugg, Judith B and Huber, Wolfgang}, journal = {Nature Methods}, year = {2016}, doi = {10.1038/nmeth.3885} } @article{love2014moderated, title = {Moderated estimation of fold change and dispersion for {RNA-Seq} data with {DESeq2}}, author = {Love, Michael I and Huber, Wolfgang and Anders, Simon}, journal = {Genome Biology}, volume = 15, number = 12, pages = 550, year = 2014, publisher = {BioMed Central Ltd} } @article{ochoa2015beyond, title = {Beyond the E-value: stratified statistics for protein domain prediction}, author = {Ochoa, Alejandro and Storey, John D and Llin{\'a}s, Manuel and Singh, Mona}, journal = {PLoS Comput Biol}, volume = 11, number = 11, pages = {e1004509}, year = 2015, publisher = {Public Library of Science} } @article{shabalin2012matrix, title = {Matrix eQTL: ultra fast eQTL analysis via large matrix operations}, author = {Shabalin, Andrey A}, journal = {Bioinformatics}, volume = 28, number = 10, pages = {1353--1358}, year = 2012, publisher = {Oxford Univ Press} }