%\VignetteIndexEntry{Annotation}
%\VignettePackage{EMBL2011}

\documentclass{article}

\usepackage{BioconductorVignette}

\title{Annotation and down-stream analysis}
\author{Martin
  Morgan\footnote{\href{mailto:mtmorgan@fhcrc.org}{mtmorgan@fhcrc.org}}}
\date{June 20-23, 2011}

\SweaveOpts{keep.source=TRUE}

\begin{document}

\maketitle

\section{The basics: key-value maps}

\section{Genomic (spatial) features}

\section{Example 1: annotating RNAseq differential representation}

\section{Internet resources}

\section{Example 2: filtering single nucleotide variants}

\appendix

\section{Under the hood: SQL}

\end{document}