snpMatrix2

Enhanced SnpMatrix and XSnpMatrix classes

Bioconductor version: Development (2.8)

Enhanced classes and methods for large SNP association studies, allowing for uncertain genotype assignments

Author: David Clayton

Maintainer: David Clayton

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("snpMatrix2")    

Documentation

PDF	R Script	Imputation and meta-analysis
PDF	R Script	Principal components analysis
PDF	R Script	snpMatrix-differences
PDF	R Script	snpMatrix2 introduction
PDF	R Script	TDT tests

Reference Manual

Details

biocViews	Microarray, SNP, GeneticVariability
Depends	R, survival, methods, Matrix
Imports	graphics, grDevices, methods, stats, survival, utils, Matrix
Suggests	hexbin
System Requirements
License	GPL-3
URL	http://www-gene.cimr.cam.ac.uk/clayton
Depends On Me	GGBase, GGtools
Imports Me
Suggests Me
Version	1.1.8

Package Downloads

Package Source	snpMatrix2_1.1.8.tar.gz
Windows Binary	snpMatrix2_1.1.8.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	snpMatrix2_1.1.8.tgz
Package Downloads Report	Download Stats