prada

Data analysis for cell-based functional assays

Bioconductor version: Development (2.8)

Tools for analysing and navigating data from high-throughput phenotyping experiments based on cellular assays and fluorescent detection (flow cytometry (FACS), high-content screening microscopy).

Author: Florian Hahne, Wolfgang Huber , Markus Ruschhaupt, Joern Toedling

Maintainer: Florian Hahne

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("prada")    

Documentation

PDF	R Script	Combining prada output and cellHTS
PDF	R Script	Removal of contaminants from FACS data

Reference Manual

Details

biocViews	CellBasedAssays, Visualization
Depends	R, Biobase, RColorBrewer, grid, methods, rrcov
Imports	Biobase, graphics, grDevices, grid, MASS, methods, RColorBrewer, rrcov, utils
Suggests	cellHTS, rflowcyt, tcltk
System Requirements
License	LGPL
URL	http://www.dkfz.de/mga/whuber, http://www.dkfz.de/LIFEdb
Depends On Me	RNAither, cellHTS, domainsignatures, rflowcyt
Imports Me	cellHTS2, rflowcyt
Suggests Me
Version	1.27.0

Package Downloads

Package Source	prada_1.27.0.tar.gz
Windows Binary	prada_1.27.0.zip (32-bit only)
MacOS 10.5 (Leopard) binary	prada_1.27.0.tgz
Package Downloads Report	Download Stats