methylumi

Handle Illumina methylation data

Bioconductor version: Development (2.8)

This package provides classes for holding and manipulating Illumina methylation data. Based on eSet, it can contain MIAME information, sample information, feature information, and multiple matrices of data. An "intelligent" import function, methylumiR can read the Illumina text files and create a MethyLumiSet. Normalization and quality control features for GoldenGate arrays are also included.

Author: Sean Davis, Pan Du, Sven Bilke

Maintainer: Sean Davis

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("methylumi")    

Documentation

PDF

R Script

An Introduction to the methylumi package

Reference Manual

Details

biocViews	DNAMethylation, TwoChannel, Preprocessing, QualityControl, CpGIsland
Depends	R, Biobase, methods
Imports	Biobase, graphics, lattice, annotate, genefilter, AnnotationDbi
Suggests	lumi, lattice, limma, xtable, GGHumanMethCancerPanelv1.db
System Requirements
License	GPL-2
URL
Depends On Me
Imports Me	lumi
Suggests Me
Version	1.7.5

Package Downloads

Package Source	methylumi_1.7.5.tar.gz
Windows Binary	methylumi_1.7.5.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	methylumi_1.7.5.tgz
Package Downloads Report	Download Stats