iChip

Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models

Bioconductor version: Development (2.8)

This package uses hidden Ising models to identify enriched genomic regions in ChIP-chip data. It can be used to analyze the data from multiple platforms (e.g., Affymetrix, Agilent, and NimbleGen), and the data with single to multiple replicates.

Author: Qianxing Mo

Maintainer: Qianxing Mo

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("iChip")    

Documentation

PDF

R Script

iChip

Reference Manual

Details

biocViews	ChIP-chip, Affymetrix, Agilent, NimbleGen, Microarray, Bioinformatics
Depends	R
Imports	limma
Suggests
System Requirements
License	GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version	1.5.0

Package Downloads

Package Source	iChip_1.5.0.tar.gz
Windows Binary	iChip_1.5.0.zip (32-bit only)
MacOS 10.5 (Leopard) binary	iChip_1.5.0.tgz
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