genefilter

genefilter: methods for filtering genes from microarray experiments

Bioconductor version: Development (2.8)

Some basic functions for filtering genes

Author: R. Gentleman, V. Carey, W. Huber, F. Hahne

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("genefilter")    

Documentation

PDF	R Script	Diagnostic plots for independent filtering
PDF	R Script	How to find genes whose expression profile is similar to that of specified genes
PDF	R Script	Using the genefilter function to filter genes from a microarray dataset

Reference Manual

Details

biocViews	Bioinformatics, Microarray
Depends
Imports	AnnotationDbi, annotate, Biobase, graphics, methods, stats, survival
Suggests	Biobase, class, hgu95av2.db, methods, tkWidgets, ALL
System Requirements
License	Artistic-2.0
URL
Depends On Me	Agi4x44PreProcess, CNTools, GeneMeta, MLInterfaces, cellHTS2, cellHTS, charm, eisa, exonmap, simpleaffy
Imports Me	Category, DESeq, GSRI, Ringo, XDE, affyQCReport, affycoretools, arrayQualityMetrics, crlmm, methylumi, phenoTest, simpleaffy, tilingArray
Suggests Me	AffyExpress, ArrayTools, BioNet, BiocCaseStudies, Category, GGtools, GOstats, GSEAlm, MCRestimate, SNPchip, VanillaICE, XDE, annotate, clusterStab, codelink, factDesign, logicFS, lumi, oligo, oneChannelGUI, pvac, qpgraph, rtracklayer, siggenes, topGO
Version	1.33.1

Package Downloads

Package Source	genefilter_1.33.1.tar.gz
Windows Binary	genefilter_1.33.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	genefilter_1.33.1.tgz
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