chopsticks

The snp.matrix and X.snp.matrix classes

Bioconductor version: Development (2.8)

Implements classes and methods for large-scale SNP association studies

Author: Hin-Tak Leung

Maintainer: Hin-Tak Leung

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("chopsticks")    

Documentation

PDF	R Script	chopsticks introduction
PDF	R Script	Imputation and meta-analysis
PDF	R Script	Principal components analysis
PDF	R Script	Rill
PDF		snpMatrix-paper-HumanHeridity2007.pdf
PDF	R Script	TDT tests

Reference Manual

Details

biocViews	Microarray, SNP, GeneticVariability
Depends	R, survival, methods
Imports	graphics, grDevices, methods, stats, survival, utils
Suggests	hexbin
System Requirements
License	GPL-3
URL	http://sourceforge.net/projects/outmodedbonsai/
Depends On Me
Imports Me
Suggests Me
Version	1.15.8

Package Downloads

Package Source	chopsticks_1.15.8.tar.gz
Windows Binary	chopsticks_1.15.8.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	chopsticks_1.15.8.tgz
Package Downloads Report	Download Stats