chipseq

chipseq: A package for analyzing chipseq data

Bioconductor version: Development (2.8)

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("chipseq")    

Documentation

PDF

R Script

A Sample ChIP-Seq analysis workflow

Reference Manual

Details

biocViews	ChIPseq
Depends	methods, IRanges, GenomicRanges, BSgenome, ShortRead
Imports	BSgenome, GenomicRanges, IRanges, lattice, methods, ShortRead, stats
Suggests	GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me	oneChannelGUI
Version	1.1.2

Package Downloads

Package Source	chipseq_1.1.2.tar.gz
Windows Binary	chipseq_1.1.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	chipseq_1.1.2.tgz
Package Downloads Report	Download Stats