cghMCR

Find chromosome regions showing common gains/losses

Bioconductor version: Development (2.8)

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("cghMCR")    

Documentation

PDF

R Script

cghMCR findMCR

Reference Manual

Details

biocViews	Platform, Microarray, CopyNumberVariants
Depends	methods, DNAcopy, CNTools, limma
Imports
Suggests
System Requirements
License	LGPL
URL
Depends On Me
Imports Me
Suggests Me
Version	1.9.0

Package Downloads

Package Source	cghMCR_1.9.0.tar.gz
Windows Binary	cghMCR_1.9.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	cghMCR_1.9.0.tgz
Package Downloads Report	Download Stats