annaffy

Annotation tools for Affymetrix biological metadata

Bioconductor version: Development (2.8)

Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.

Author: Colin A. Smith

Maintainer: Colin A. Smith

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("annaffy")    

Documentation

PDF

R Script

annaffy Primer

Reference Manual

Details

biocViews	OneChannel, Microarray, Annotation, GO, Pathways, ReportWriting
Depends	R, methods, Biobase, GO.db, KEGG.db
Imports	AnnotationDbi
Suggests	hgu95av2.db, multtest, tcltk
System Requirements
License	LGPL
URL
Depends On Me	PGSEA, webbioc
Imports Me	GGtools, affycoretools
Suggests Me	AffyExpress, ArrayTools, BiocCaseStudies, maDB, oneChannelGUI
Version	1.23.1

Package Downloads

Package Source	annaffy_1.23.1.tar.gz
Windows Binary	annaffy_1.23.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	annaffy_1.23.1.tgz
Package Downloads Report	Download Stats