affyILM

Linear Model of background subtraction and the Langmuir isotherm

Bioconductor version: Development (2.8)

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

Author: K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon

Maintainer: Myriam Kroll and Fabrice Berger

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("affyILM")    

Documentation

PDF

R Script

affyILM0.0.1

Reference Manual

Details

biocViews	Microarray, OneChannel, Preprocessing
Depends	R, methods
Imports	affxparser, gcrma, affy, graphics, methods
Suggests	AffymetrixDataTestFiles
System Requirements	Gnu Scientific Library version >= 1.8
License	GPL-3
URL
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Version	1.3.0

Package Downloads

Package Source	affyILM_1.3.0.tar.gz
Windows Binary	affyILM_1.3.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	affyILM_1.3.0.tgz
Package Downloads Report	Download Stats