adSplit

Annotation-Driven Clustering

Bioconductor version: Development (2.8)

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author: Claudio Lottaz, Joern Toedling

Maintainer: Claudio Lottaz

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("adSplit")    

Documentation

PDF	R Script	Annotation-Driven Clustering
PDF		bcb_logo.pdf
PDF		minerva_bcb.pdf
PDF		Rplots.pdf

Reference Manual

Details

biocViews	Microarray, Bioinformatics, Clustering
Depends	R, methods
Imports	AnnotationDbi, Biobase, cluster, GO.db, graphics, grDevices, KEGG.db, methods, multtest, stats
Suggests	golubEsets, vsn, hu6800.db
System Requirements
License	GPL (>= 2)
URL	http://compdiag.molgen.mpg.de/software/index.shtml
Depends On Me
Imports Me
Suggests Me
Version	1.21.0

Package Downloads

Package Source	adSplit_1.21.0.tar.gz
Windows Binary	adSplit_1.21.0.zip (32-bit only)
MacOS 10.5 (Leopard) binary	adSplit_1.21.0.tgz
Package Downloads Report	Download Stats