RpsiXML

R interface to PSI-MI 2.5 files

Bioconductor version: Development (2.8)

Queries, data structure and interface to visualization of interaction datasets. This package inplements the PSI-MI 2.5 standard and supports up to now 8 databases. Further databases supporting PSI-MI 2.5 standard will be added continuously.

Author: Jitao David Zhang, Stefan Wiemann, Marc Carlson, with contributions from Tony Chiang

Maintainer: Jitao David Zhang

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("RpsiXML")    

Documentation

PDF	R Script	Application Examples of RpsiXML package
PDF	R Script	Reading PSI-25 XML files

Reference Manual

Details

biocViews	Infrastructure, Proteomics
Depends	methods, annotate, graph, Biobase, RBGL, XML, hypergraph, AnnotationDbi
Imports
Suggests	org.Hs.eg.db, org.Mm.eg.db, org.Dm.eg.db, org.Rn.eg.db, org.Sc.sgd.db, hom.Hs.inp.db, hom.Mm.inp.db, hom.Dm.inp.db, hom.Rn.inp.db, hom.Sc.inp.db, Rgraphviz, ppiStats
System Requirements
License	LGPL-3
URL	http://www.bioconductor.org
Depends On Me	ScISI
Imports Me	ScISI
Suggests Me
Version	1.11.0

Package Downloads

Package Source	RpsiXML_1.11.0.tar.gz
Windows Binary	RpsiXML_1.11.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	RpsiXML_1.11.0.tgz
Package Downloads Report	Download Stats