RankProd

Rank Product method for identifying differentially expressed genes with application in meta-analysis

Bioconductor version: Development (2.8)

Non-paramteric method for identifying differentially expressed (up- or down- regulated )genes based on the estimated percentage of false predictions (pfp).The method can combine data sets from different origins (meta-analysis)to increase the power of the identification.

Author: Fangxin Hong and Ben Wittner with contribution from Rainer Breitling and Colin Smith

Maintainer: Fangxin Hong

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("RankProd")    

Documentation

PDF

R Script

RankProd Tutorial

Reference Manual

Details

biocViews	DifferentialExpression
Depends	R
Imports	graphics
Suggests
System Requirements
License	file LICENSE
URL
Depends On Me	HTSanalyzeR, RNAither
Imports Me
Suggests Me	oneChannelGUI
Version	2.23.0

Package Downloads

Package Source	RankProd_2.23.0.tar.gz
Windows Binary	RankProd_2.23.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	RankProd_2.23.0.tgz
Package Downloads Report	Download Stats