MergeMaid

Merge Maid

Bioconductor version: Development (2.8)

The functions in this R extension are intended for cross-study comparison of gene expression array data. Required from the user is gene expression matrices, their corresponding gene-id vectors and other useful information, and they could be 'list','matrix', or 'ExpressionSet'. The main function is 'mergeExprs' which transforms the input objects into data in the merged format, such that common genes in different datasets can be easily found. And the function 'intcor' calculate the correlation coefficients. Other functions use the output from 'modelOutcome' to graphically display the results and cross-validate associations of gene expression data with survival.

Author: Xiaogang Zhong Leslie Cope Elizabeth Garrett Giovanni Parmigiani

Maintainer: Xiaogang Zhong

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("MergeMaid")    

Documentation

PDF

R Script

MergeMaid primer

Reference Manual

Details

biocViews	Microarray, DifferentialExpression, Visualization
Depends	R, survival, Biobase, MASS, methods
Imports
Suggests
System Requirements
License	GPL (>= 2)
URL	http://astor.som.jhmi.edu/MergeMaid
Depends On Me
Imports Me	XDE, metaArray
Suggests Me	oneChannelGUI
Version	2.23.0

Package Downloads

Package Source	MergeMaid_2.23.0.tar.gz
Windows Binary	MergeMaid_2.23.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	MergeMaid_2.23.0.tgz
Package Downloads Report	Download Stats