GSRI

Gene Set Regulation Index

Bioconductor version: Development (2.8)

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("GSRI")    

Documentation

PDF

R Script

Introduction on how to use the Gene Set Regulation Index (GSRI) package to estimate the number of regulated genes in gene sets

Reference Manual

Details

biocViews	Microarray, Transcription, DifferentialExpression, Genetics, Bioinformatics
Depends	R, fdrtool
Imports	methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les
Suggests	limma, hgu95av2.db
System Requirements
License	GPL-3
URL	http://www.fdmold.uni-freiburg.de/~jgehring/
Depends On Me
Imports Me
Suggests Me
Version	1.99.4

Package Downloads

Package Source	GSRI_1.99.4.tar.gz
Windows Binary	GSRI_1.99.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GSRI_1.99.2.tgz
Package Downloads Report	Download Stats