BSgenome

Infrastructure for Biostrings-based genome data packages

Bioconductor version: Development (2.8)

Infrastructure shared by all the Biostrings-based genome data packages

Author: Herve Pages

Maintainer: H. Pages

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("BSgenome")    

Documentation

PDF	R Script	Efficient genome searching with Biostrings and the BSgenome data packages
PDF	R Script	How to forge a BSgenome data package

Reference Manual

Details

biocViews	Genetics, Infrastructure, DataRepresentation, SequenceMatching, Annotation, SNP
Depends	R, methods, IRanges, GenomicRanges, Biostrings
Imports
Suggests	RUnit, BSgenome.Celegans.UCSC.ce2, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP.20100427, hgu95av2probe, Biobase
System Requirements
License	Artistic-2.0
URL
Depends On Me	ChIPpeakAnno, MEDIPS, PICS, chipseq, rGADEM
Imports Me	ChIPpeakAnno, MEDIPS, PICS, R453Plus1Toolbox, charm, chipseq, girafe, rtracklayer
Suggests Me	Biostrings, GeneRegionScan, GenomicFeatures, GenomicRanges, MEDIPS, oneChannelGUI
Version	1.19.6

Package Downloads

Package Source	BSgenome_1.19.6.tar.gz
Windows Binary	BSgenome_1.19.5.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	BSgenome_1.19.5.tgz
Package Downloads Report	Download Stats