############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:CCl4.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings CCl4_1.44.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/CCl4.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘CCl4/DESCRIPTION’ ... OK * this is package ‘CCl4’ version ‘1.44.0’ * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CCl4’ can be installed ... OK * checking installed package size ... NOTE installed size is 304.2Mb sub-directories of 1Mb or more: data 12.0Mb extdata 292.2Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress CCl4.RData 9.1Mb 2.1Mb xz CCl4_RGList.RData 2.9Mb 2.0Mb xz * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘validDataFiles.R’ Comparing ‘validDataFiles.Rout’ to ‘validDataFiles.Rout.save’ ...5,19d4 < Attaching package: 'BiocGenerics' < < The following objects are masked from 'package:stats': < < IQR, mad, sd, var, xtabs < < The following objects are masked from 'package:base': < < Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, < as.data.frame, basename, cbind, colnames, dirname, do.call, < duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, < lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, < pmin.int, rank, rbind, rownames, sapply, saveRDS, setdiff, table, < tapply, union, unique, unsplit, which.max, which.min < 22,31c7,9 < Vignettes contain introductory material; view with < 'browseVignettes()'. To cite Bioconductor, see < 'citation("Biobase")', and for packages 'citation("pkgname")'. < < < Attaching package: 'limma' < < The following object is masked from 'package:BiocGenerics': < < plotMA --- > Vignettes contain introductory material. To view, type > 'openVignette()'. To cite Bioconductor, see > 'citation("Biobase")' and for packages 'citation(pkgname)'. OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.20-data-experiment/meat/CCl4.Rcheck/00check.log’ for details.