############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chromstaR ### ############################################################################## ############################################################################## * checking for file ‘chromstaR/DESCRIPTION’ ... OK * preparing ‘chromstaR’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘chromstaR.Rnw’ using knitr 2024-11-19 16:19:29.146 R[48612:454034801] XType: com.apple.fonts is not accessible. 2024-11-19 16:19:29.146 R[48612:454034801] XType: XTFontStaticRegistry is enabled. 2024-11-19 16:19:29.178 R[48614:454034828] XType: com.apple.fonts is not accessible. 2024-11-19 16:19:29.179 R[48614:454034828] XType: XTFontStaticRegistry is enabled. 2024-11-19 16:19:29.720 R[48613:454034827] XType: com.apple.fonts is not accessible. 2024-11-19 16:19:29.720 R[48613:454034827] XType: XTFontStaticRegistry is enabled. 2024-11-19 16:20:09.737 R[52272:454043718] XType: com.apple.fonts is not accessible. 2024-11-19 16:20:09.737 R[52272:454043718] XType: XTFontStaticRegistry is enabled. 2024-11-19 16:20:09.739 R[52270:454043711] XType: com.apple.fonts is not accessible. 2024-11-19 16:20:09.739 R[52270:454043711] XType: XTFontStaticRegistry is enabled. 2024-11-19 16:20:10.207 R[52273:454043727] XType: com.apple.fonts is not accessible. 2024-11-19 16:20:10.207 R[52273:454043727] XType: XTFontStaticRegistry is enabled. 2024-11-19 16:20:10.244 R[52271:454043726] XType: com.apple.fonts is not accessible. 2024-11-19 16:20:10.244 R[52271:454043726] XType: XTFontStaticRegistry is enabled. Quitting from lines 377-396 [multivariate_combinatorial_enrichment] (chromstaR.Rnw) Error: processing vignette 'chromstaR.Rnw' failed with diagnostics: The given dataset: rnorvegicus_gene_ensembl , is not valid. Correct dataset names can be obtained with the listDatasets() function. --- failed re-building ‘chromstaR.Rnw’ SUMMARY: processing the following file failed: ‘chromstaR.Rnw’ Error: Vignette re-building failed. Execution halted