############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MAGeCKFlute ### ############################################################################## ############################################################################## * checking for file ‘MAGeCKFlute/DESCRIPTION’ ... OK * preparing ‘MAGeCKFlute’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MAGeCKFlute.Rmd’ using rmarkdown Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 8 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 3 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 10 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider increasing max.overlaps --- finished re-building ‘MAGeCKFlute.Rmd’ --- re-building ‘MAGeCKFlute_enrichment.Rmd’ using rmarkdown Quitting from lines 104-110 [enrichplot] (MAGeCKFlute_enrichment.Rmd) Error: processing vignette 'MAGeCKFlute_enrichment.Rmd' failed with diagnostics: 'list' object cannot be coerced to type 'integer' --- failed re-building ‘MAGeCKFlute_enrichment.Rmd’ SUMMARY: processing the following file failed: ‘MAGeCKFlute_enrichment.Rmd’ Error: Vignette re-building failed. Execution halted