############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 AlphaMissenseR ### ############################################################################## ############################################################################## * checking for file ‘AlphaMissenseR/DESCRIPTION’ ... OK * preparing ‘AlphaMissenseR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘alphafold.Rmd’ using rmarkdown Quitting from lines 163-166 [am_data-hg38] (alphafold.Rmd) Error: processing vignette 'alphafold.Rmd' failed with diagnostics: Failed to collect lazy table. Caused by error: ! attempt to write a readonly database --- failed re-building ‘alphafold.Rmd’ --- re-building ‘benchmarking.Rmd’ using rmarkdown --- finished re-building ‘benchmarking.Rmd’ --- re-building ‘clinvar.Rmd’ using rmarkdown --- finished re-building ‘clinvar.Rmd’ --- re-building ‘introduction.Rmd’ using rmarkdown --- finished re-building ‘introduction.Rmd’ --- re-building ‘issues.Rmd’ using rmarkdown --- finished re-building ‘issues.Rmd’ SUMMARY: processing the following file failed: ‘alphafold.Rmd’ Error: Vignette re-building failed. Execution halted