############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AlphaMissenseR ### ############################################################################## ############################################################################## * checking for file ‘AlphaMissenseR/DESCRIPTION’ ... OK * preparing ‘AlphaMissenseR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘alphafold.Rmd’ using rmarkdown --- finished re-building ‘alphafold.Rmd’ --- re-building ‘benchmarking.Rmd’ using rmarkdown --- finished re-building ‘benchmarking.Rmd’ --- re-building ‘clinvar.Rmd’ using rmarkdown Quitting from clinvar.Rmd:60-62 [plot_P37023] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! vector memory limit of 64.0 Gb reached, see mem.maxVSize() --- Backtrace: ▆ 1. └─AlphaMissenseR::clinvar_plot(uniprotId = "P37023") 2. └─AlphaMissenseR:::clinvar_filter_cv_table(...) 3. ├─dplyr::mutate(...) 4. ├─tidyr::separate(...) 5. └─tidyr:::separate.data.frame(...) 6. └─tidyr:::str_separate(...) 7. └─tidyr:::str_split_fixed(...) 8. └─tidyr:::simplifyPieces(pieces, n, fill == "left") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'clinvar.Rmd' failed with diagnostics: vector memory limit of 64.0 Gb reached, see mem.maxVSize() --- failed re-building ‘clinvar.Rmd’ --- re-building ‘introduction.Rmd’ using rmarkdown --- finished re-building ‘introduction.Rmd’ --- re-building ‘issues.Rmd’ using rmarkdown --- finished re-building ‘issues.Rmd’ SUMMARY: processing the following file failed: ‘clinvar.Rmd’ Error: Vignette re-building failed. Execution halted