##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:BiocFileCache.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings BiocFileCache_2.15.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/BiocFileCache.Rcheck’
* using R Under development (unstable) (2024-11-14 r87333)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘BiocFileCache/DESCRIPTION’ ... OK
* this is package ‘BiocFileCache’ version ‘2.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocFileCache’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.sql_clean_cache: no visible binding for global variable ‘rid’
.sql_clean_cache: no visible binding for global variable ‘access_time’
.sql_get_resource_table: no visible binding for global variable ‘rid’
.sql_get_resource_table: no visible binding for global variable ‘id’
Undefined global functions or variables:
  access_time id rid
* checking Rd files ... NOTE
checkRd: (-1) BiocFileCache-class.Rd:486-487: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BiocFileCache-class.Rd:488: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BiocFileCache-class.Rd:495-496: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BiocFileCache-class.Rd:497-500: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BiocFileCache-class.Rd:501: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BiocFileCache-class.Rd:502-504: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BiocFileCache-class.Rd:505-506: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BiocFileCache-class.Rd:507-508: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BiocFileCache-class.Rd:509-511: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BiocFileCache-class.Rd:512-516: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/BiocFileCache.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL BiocFileCache
###
##############################################################################
##############################################################################


* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’
* installing *source* package ‘BiocFileCache’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocFileCache)

R Under development (unstable) (2024-11-14 r87333) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(BiocFileCache)
Loading required package: dbplyr
> 
> test_check("BiocFileCache")
  adding: BiocFileCacheExport/ (stored 0%)
  adding: BiocFileCacheExport/19a83612b4dc2d_file19a8362d2b8dd1 (stored 0%)
  adding: BiocFileCacheExport/file19a8362d2b8dd1 (stored 0%)
  adding: BiocFileCacheExport/BiocFileCache.sqlite (deflated 96%)
[ FAIL 0 | WARN 3 | SKIP 0 | PASS 257 ]

[ FAIL 0 | WARN 3 | SKIP 0 | PASS 257 ]
> 
> proc.time()
   user  system elapsed 
 16.455   0.618  28.091