############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSVA ### ############################################################################## ############################################################################## * checking for file ‘GSVA/DESCRIPTION’ ... OK * preparing ‘GSVA’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes ----------------------------------- * installing *source* package ‘GSVA’ ... ** this is package ‘GSVA’ version ‘2.1.12’ ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cli/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c ecdfvals.c -o ecdfvals.o gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cli/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c kcdfvals.c -o kcdfvals.o gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cli/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c kernel_estimation.c -o kernel_estimation.o gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cli/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c ks_test.c -o ks_test.o gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cli/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c register_cmethods.c -o register_cmethods.o gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cli/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c utils.c -o utils.o gcc -shared -L/usr/local/lib -o GSVA.so ecdfvals.o kcdfvals.o kernel_estimation.o ks_test.o register_cmethods.o utils.o installing to /tmp/RtmpBoZDOA/Rinst9427b1e4e141d/00LOCK-GSVA/00new/GSVA/libs ** R ** inst Warning in file.append(to[okay], from[okay]) : write error during file append Warning in file.append(to[okay], from[okay]) : write error during file append Warning in file.append(to[okay], from[okay]) : write error during file append Warning in file.append(to[okay], from[okay]) : write error during file append Warning in file.append(to[okay], from[okay]) : write error during file append Warning in file.append(to[okay], from[okay]) : write error during file append ** byte-compile and prepare package for lazy loading Fatal error: cannot create 'R_TempDir' ERROR: lazy loading failed for package ‘GSVA’ * removing ‘/tmp/RtmpBoZDOA/Rinst9427b1e4e141d/GSVA’ ----------------------------------- ERROR: package installation failed