Back to Workflows build report for BioC 3.8 |
This page was generated on 2018-05-18 09:51:49 -0400 (Fri, 18 May 2018).
Package 21/21 | Hostname | OS / Arch | INSTALL | BUILD | ||||||
variants 1.3.0 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK |
Package: variants |
Version: 1.3.0 |
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/variants/Annotating_Genomic_Variants.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/variants/Annotating_Genomic_Variants.Rmd", ".buildwebvig/variants/Annotating_Genomic_Variants.R")' |
StartedAt: 2018-05-18 08:54:30 -0400 (Fri, 18 May 2018) |
EndedAt: 2018-05-18 08:55:03 -0400 (Fri, 18 May 2018) |
EllapsedTime: 33.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/variants/Annotating_Genomic_Variants.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/variants/Annotating_Genomic_Variants.Rmd", ".buildwebvig/variants/Annotating_Genomic_Variants.R")' ### ############################################################################## ############################################################################## > rmarkdown::render(".buildwebvig/variants/Annotating_Genomic_Variants.Rmd", output_format="BiocStyle:::html_fragment") processing file: Annotating_Genomic_Variants.Rmd | | | 0% | |.. | 2% ordinary text without R code | |... | 5% label: unnamed-chunk-1 (with options) List of 3 $ echo : logi FALSE $ results: chr "hide" $ warning: logi FALSE | |..... | 7% inline R code fragments | |....... | 9% label: unnamed-chunk-2 (with options) List of 1 $ eval: logi FALSE | |........ | 12% ordinary text without R code | |.......... | 14% label: unnamed-chunk-3 (with options) List of 1 $ eval: logi FALSE | |........... | 16% ordinary text without R code | |............. | 19% label: unnamed-chunk-4 (with options) List of 1 $ eval: logi FALSE | |............... | 21% ordinary text without R code | |................ | 23% label: unnamed-chunk-5 | |.................. | 26% ordinary text without R code | |.................... | 28% label: unnamed-chunk-6 | |..................... | 30% ordinary text without R code | |....................... | 33% label: unnamed-chunk-7 | |........................ | 35% ordinary text without R code | |.......................... | 37% label: unnamed-chunk-8 | |............................ | 40% ordinary text without R code | |............................. | 42% label: 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|.................................................. | 72% ordinary text without R code | |.................................................... | 74% label: unnamed-chunk-16 | |...................................................... | 77% ordinary text without R code | |....................................................... | 79% label: unnamed-chunk-17 | |......................................................... | 81% ordinary text without R code | |........................................................... | 84% label: unnamed-chunk-18 | |............................................................ | 86% ordinary text without R code | |.............................................................. | 88% label: unnamed-chunk-19 (with options) List of 1 $ eval: logi FALSE | |............................................................... | 91% ordinary text without R code | |................................................................. | 93% label: unnamed-chunk-20 (with options) List of 1 $ eval: logi FALSE | |................................................................... | 95% ordinary text without R code | |.................................................................... | 98% label: unnamed-chunk-21 | |......................................................................| 100% ordinary text without R code output file: Annotating_Genomic_Variants.knit.md /usr/bin/pandoc +RTS -K512m -RTS Annotating_Genomic_Variants.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output Annotating_Genomic_Variants.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.8-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' Output created: Annotating_Genomic_Variants.html > > > knitr::purl(".buildwebvig/variants/Annotating_Genomic_Variants.Rmd", ".buildwebvig/variants/Annotating_Genomic_Variants.R") processing file: .buildwebvig/variants/Annotating_Genomic_Variants.Rmd | | | 0% | |.. | 2% | |... | 5% | |..... | 7% | |...... | 9% | |........ | 12% | |......... | 14% | |........... | 16% | |............ | 19% | |.............. | 21% | |............... | 23% | |................. | 26% | |.................. | 28% | |.................... | 30% | |..................... | 33% | |....................... | 35% | |........................ | 37% | |.......................... | 40% | |........................... | 42% | |............................. | 44% | |.............................. | 47% | |................................ | 49% | |................................. | 51% | |................................... | 53% | |.................................... | 56% | |...................................... | 58% | |....................................... | 60% | 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|.................................................................| 100% output file: .buildwebvig/variants/Annotating_Genomic_Variants.R [1] ".buildwebvig/variants/Annotating_Genomic_Variants.R" > >