Michael Love
| Snapshot Date: 2018-05-18 07:35:07 -0400 (Fri, 18 May 2018) |
| URL: https://git.bioconductor.org/packages/rnaseqGene |
| Branch: master |
| Last Commit: 4941ec0 |
| Last Changed Date: 2018-04-30 10:10:33 -0400 (Mon, 30 Apr 2018) |
| Back to Workflows build report for BioC 3.8 |
This page was generated on 2018-05-18 09:51:46 -0400 (Fri, 18 May 2018).
| Package 16/21 | Hostname | OS / Arch | INSTALL | BUILD | ||||||
| rnaseqGene 1.3.0 Michael Love
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | |
| Package: rnaseqGene |
| Version: 1.3.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/rnaseqGene/rnaseqGene.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/rnaseqGene/rnaseqGene.Rmd", ".buildwebvig/rnaseqGene/rnaseqGene.R")' |
| StartedAt: 2018-05-18 08:50:36 -0400 (Fri, 18 May 2018) |
| EndedAt: 2018-05-18 08:53:06 -0400 (Fri, 18 May 2018) |
| EllapsedTime: 150.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/rnaseqGene/rnaseqGene.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/rnaseqGene/rnaseqGene.Rmd", ".buildwebvig/rnaseqGene/rnaseqGene.R")'
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> rmarkdown::render(".buildwebvig/rnaseqGene/rnaseqGene.Rmd", output_format="BiocStyle:::html_fragment")
processing file: rnaseqGene.Rmd
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Welcome to Bioconductor
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using 'apeglm' for LFC shrinkage. If used in published research, please cite:
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bioRxiv. https://doi.org/10.1101/303255
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Session info ------------------------------------------------------------------
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output file: rnaseqGene.knit.md
/usr/bin/pandoc +RTS -K512m -RTS rnaseqGene.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output rnaseqGene.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.8-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --filter /usr/bin/pandoc-citeproc
Output created: rnaseqGene.html
Warning message:
In .get_cds_IDX(type, phase) :
The "phase" metadata column contains non-NA values for features of type
stop_codon. This information was ignored.
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> knitr::purl(".buildwebvig/rnaseqGene/rnaseqGene.Rmd", ".buildwebvig/rnaseqGene/rnaseqGene.R")
processing file: .buildwebvig/rnaseqGene/rnaseqGene.Rmd
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output file: .buildwebvig/rnaseqGene/rnaseqGene.R
[1] ".buildwebvig/rnaseqGene/rnaseqGene.R"
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