Leonardo Collado-Torres
| Snapshot Date: 2018-05-18 07:35:07 -0400 (Fri, 18 May 2018) |
| URL: https://git.bioconductor.org/packages/recountWorkflow |
| Branch: master |
| Last Commit: 5095cf3 |
| Last Changed Date: 2018-04-30 10:10:33 -0400 (Mon, 30 Apr 2018) |
| Back to Workflows build report for BioC 3.8 |
This page was generated on 2018-05-18 09:51:46 -0400 (Fri, 18 May 2018).
| Package 14/21 | Hostname | OS / Arch | INSTALL | BUILD | ||||||
| recountWorkflow 1.3.0 Leonardo Collado-Torres
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | |
| Package: recountWorkflow |
| Version: 1.3.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/recountWorkflow/recount-workflow.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/recountWorkflow/recount-workflow.Rmd", ".buildwebvig/recountWorkflow/recount-workflow.R")' |
| StartedAt: 2018-05-18 08:48:45 -0400 (Fri, 18 May 2018) |
| EndedAt: 2018-05-18 09:03:16 -0400 (Fri, 18 May 2018) |
| EllapsedTime: 870.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/recountWorkflow/recount-workflow.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/recountWorkflow/recount-workflow.Rmd", ".buildwebvig/recountWorkflow/recount-workflow.R")'
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> rmarkdown::render(".buildwebvig/recountWorkflow/recount-workflow.Rmd", output_format="BiocStyle:::html_fragment")
processing file: recount-workflow.Rmd
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Welcome to Bioconductor
Vignettes contain introductory material; view with
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'citation("Biobase")', and for packages 'citation("pkgname")'.
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If you use clusterProfiler in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287.
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output file: recount-workflow.knit.md
/usr/bin/pandoc +RTS -K512m -RTS recount-workflow.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output recount-workflow.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.8-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --filter /usr/bin/pandoc-citeproc
Output created: recount-workflow.html
>
>
> knitr::purl(".buildwebvig/recountWorkflow/recount-workflow.Rmd", ".buildwebvig/recountWorkflow/recount-workflow.R")
processing file: .buildwebvig/recountWorkflow/recount-workflow.Rmd
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|.............................................................. | 96%
|
|............................................................... | 97%
|
|................................................................ | 98%
|
|................................................................ | 99%
|
|.................................................................| 100%
output file: .buildwebvig/recountWorkflow/recount-workflow.R
[1] ".buildwebvig/recountWorkflow/recount-workflow.R"
>
>