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###
### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 GNET2
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* checking for file ‘GNET2/DESCRIPTION’ ... OK
* preparing ‘GNET2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘run_gnet2.Rmd’ using rmarkdown

Quitting from run_gnet2.Rmd:130-133 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `group_by()` instead.
ℹ See vignette('programming') for more help
---
Backtrace:
     ▆
  1. ├─GNET2::extract_edges(gnet_result)
  2. │ └─el %>% group_by_(.dots = c("regulator", "target")) %>% ...
  3. ├─dplyr::summarise_all(., list(score = sum))
  4. │ └─dplyr:::manip_all(...)
  5. │   ├─rlang::syms(tbl_nongroup_vars(.tbl))
  6. │   │ └─rlang:::map(x, sym)
  7. │   │   └─base::lapply(.x, .f, ...)
  8. │   └─dplyr::tbl_nongroup_vars(.tbl)
  9. │     ├─generics::setdiff(tbl_vars(x), group_vars(x))
 10. │     └─dplyr::tbl_vars(x)
 11. │       ├─dplyr:::new_sel_vars(tbl_vars_dispatch(x), group_vars(x))
 12. │       │ └─base::structure(...)
 13. │       └─dplyr:::tbl_vars_dispatch(x)
 14. └─dplyr::group_by_(., .dots = c("regulator", "target"))
 15.   └─dplyr:::lazy_defunct("group_by")
 16.     └─lifecycle::deprecate_stop(...)
 17.       └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'run_gnet2.Rmd' failed with diagnostics:
`group_by_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `group_by()` instead.
ℹ See vignette('programming') for more help
--- failed re-building ‘run_gnet2.Rmd’

SUMMARY: processing the following file failed:
  ‘run_gnet2.Rmd’

Error: Vignette re-building failed.
Execution halted