############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SingscoreAMLMutations ### ############################################################################## ############################################################################## * checking for file ‘SingscoreAMLMutations/DESCRIPTION’ ... OK * preparing ‘SingscoreAMLMutations’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘workflow_transcriptional_mut_sig.Rmd’ using rmarkdown Quitting from workflow_transcriptional_mut_sig.Rmd:193-195 [gdc_prepare] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'workflow_transcriptional_mut_sig.Rmd' failed with diagnostics: Can't select columns that don't exist. ✖ Column `disease_response` doesn't exist. --- failed re-building ‘workflow_transcriptional_mut_sig.Rmd’ --- re-building ‘workflow_transcriptional_mut_sig_chinese.Rmd’ using rmarkdown Quitting from workflow_transcriptional_mut_sig_chinese.Rmd:190-192 [gdc_prepare] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'workflow_transcriptional_mut_sig_chinese.Rmd' failed with diagnostics: Can't select columns that don't exist. ✖ Column `disease_response` doesn't exist. --- failed re-building ‘workflow_transcriptional_mut_sig_chinese.Rmd’ SUMMARY: processing the following files failed: ‘workflow_transcriptional_mut_sig.Rmd’ ‘workflow_transcriptional_mut_sig_chinese.Rmd’ Error: Vignette re-building failed. Execution halted