##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:faahKO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings faahKO_1.47.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/faahKO.Rcheck’
* using R Under development (unstable) (2025-03-13 r87965)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘faahKO/DESCRIPTION’ ... OK
* this is package ‘faahKO’ version ‘1.47.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘faahKO’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 25.3Mb
  sub-directories of 1Mb or more:
    cdf  24.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘inst/NEWS.Rd’:
  NEWS.Rd: Sections \title, and \name must exist and be unique in Rd files
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
NEWS.Rd: Sections \title, and \name must exist and be unique in Rd files
problem found in ‘NEWS.Rd’
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in ‘faahKO-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: faahko3
> ### Title: FAAH knockout LC/MS data XCMSnExp
> ### Aliases: faahko3 faahKO3
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ## The directory with the NetCDF LC/MS files
> cdfpath <- file.path(find.package("faahKO"), "cdf")
> cdfpath
[1] "/home/biocbuild/bbs-3.21-bioc/R/site-library/faahKO/cdf"
> list.files(cdfpath, recursive = TRUE)
 [1] "KO/ko15.CDF" "KO/ko16.CDF" "KO/ko18.CDF" "KO/ko19.CDF" "KO/ko21.CDF"
 [6] "KO/ko22.CDF" "WT/wt15.CDF" "WT/wt16.CDF" "WT/wt18.CDF" "WT/wt19.CDF"
[11] "WT/wt21.CDF" "WT/wt22.CDF"
> 
> data(faahko3)
> 
> ## XCMSnExp Summary
> show(faahko3)
MSn experiment data ("XCMSnExp")
Object size in memory: 4.59 Mb
- - - Spectra data - - -
 MS level(s): 1 
 Number of spectra: 15336 
 MSn retention times: 41:32 - 75:14 minutes
- - - Processing information - - -
Data loaded [Tue Mar 24 13:28:38 2020] 
 MSnbase version: 2.13.2 
- - - Meta data  - - -
Error: unable to find an inherited method for function ‘dimLabels’ for signature ‘object = "NAnnotatedDataFrame"’
Execution halted
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.21-data-experiment/meat/faahKO.Rcheck/00check.log’
for details.