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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:sesame.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings sesame_1.25.1.tar.gz
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/sesame.Rcheck’
* using R Under development (unstable) (2024-11-14 r87333)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘sesame/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sesame’ version ‘1.25.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sesame’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
imputeBetasByGenomicNeighbors 25.432  0.522  25.975
testEnrichmentGene            25.460  0.442  25.924
inferSex                      15.003  0.271  15.274
imputeBetas                   13.203  0.505  13.829
sesameQC_calcStats            13.431  0.015  13.451
inferSpecies                  12.029  1.139  13.175
sesameQC_plotHeatSNPs         13.024  0.024  13.052
KYCG_plotMeta                 12.740  0.170  12.910
ELBAR                         12.495  0.382  12.885
KYCG_plotEnrichAll            12.001  0.241  12.250
KYCG_annoProbes                9.939  0.232  10.179
diffRefSet                     9.562  0.088   9.662
sesameQC_plotBar               9.412  0.133   9.571
KYCG_plotMetaEnrichment        8.926  0.100   9.025
testEnrichmentSEA              8.102  0.097   8.200
matchDesign                    7.820  0.058   7.884
compareReference               7.663  0.190   7.856
compareMouseStrainReference    7.706  0.101   7.812
getRefSet                      7.642  0.072   7.719
KYCG_buildGeneDBs              7.298  0.253   7.555
sesameQC_plotBetaByDesign      7.446  0.004   7.454
visualizeGene                  6.529  0.107   6.637
DML                            5.789  0.248   6.046
dyeBiasNL                      5.835  0.105   5.945
inferStrain                    5.433  0.456   5.892
DMR                            5.284  0.102   5.391
sdf_read_table                 4.932  0.111   5.043
inferTissue                    4.956  0.059   5.016
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK