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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data pathview
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* checking for file ‘pathview/DESCRIPTION’ ... OK
* preparing ‘pathview’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pathview.Rnw’ using Sweave

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Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
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Info: Downloading xml files for hsa04110, 1/1 pathways..
Info: Downloading png files for hsa04110, 1/1 pathways..
'select()' returned 1:1 mapping between keys and columns
Info: Working in directory /tmp/RtmpLkTjil/Rbuild8c83026900dd9/pathview/vignettes
Info: Writing image file hsa04110.gse16873.png
'select()' returned 1:1 mapping between keys and columns
Info: Working in directory /tmp/RtmpLkTjil/Rbuild8c83026900dd9/pathview/vignettes
Info: Writing image file hsa04110.gse16873.2layer.png
'select()' returned 1:1 mapping between keys and columns
Warning: reconcile groups sharing member nodes!
Info: Working in directory /tmp/RtmpLkTjil/Rbuild8c83026900dd9/pathview/vignettes
Info: Writing image file hsa04110.gse16873.pdf
'select()' returned 1:1 mapping between keys and columns
Warning: reconcile groups sharing member nodes!
Info: Working in directory /tmp/RtmpLkTjil/Rbuild8c83026900dd9/pathview/vignettes
Info: Writing image file hsa04110.gse16873.2layer.pdf
'select()' returned 1:1 mapping between keys and columns
Info: Working in directory /tmp/RtmpLkTjil/Rbuild8c83026900dd9/pathview/vignettes
Info: Writing image file hsa04110.gse16873.split.pdf
'select()' returned 1:1 mapping between keys and columns
Info: Working in directory /tmp/RtmpLkTjil/Rbuild8c83026900dd9/pathview/vignettes
Info: Writing image file hsa04110.gse16873.split.expanded.pdf
Info: Downloading xml files for hsa00640, 1/1 pathways..
Info: Downloading png files for hsa00640, 1/1 pathways..
Warning: Download of hsa00640 png file failed!
This pathway may not exist!
Warning: Failed to download KEGG xml/png files, hsa00640 skipped!

Error: processing vignette 'pathview.Rnw' failed with diagnostics:
 chunk 22 (label = gene_cpd.data) 
Error in pv.out$plot.data.cpd : $ operator is invalid for atomic vectors

--- failed re-building ‘pathview.Rnw’

SUMMARY: processing the following file failed:
  ‘pathview.Rnw’

Error: Vignette re-building failed.
Execution halted