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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL girafe
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘girafe’ ...
** this is package ‘girafe’ version ‘1.59.1’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -DR_NO_REMAP -c coverage.cpp -o coverage.o
coverage.cpp: In function ‘SEXPREC* girafe_coverage(SEXP, SEXP, SEXP, SEXP)’:
coverage.cpp:44:15: error: ‘length’ was not declared in this scope
   44 |     int len = length(starts);
      |               ^~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/include/Rdefines.h:41,
                 from coverage.cpp:8:
coverage.cpp:104:20: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
  104 |     PROTECT( res = allocVector( INTSXP, xxit * 2) );
      |                    ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:202: coverage.o] Error 1
ERROR: compilation failed for package ‘girafe’
* removing ‘/home/biocbuild/bbs-3.21-bioc/R/site-library/girafe’