############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:topdownrdata.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings topdownrdata_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/topdownrdata.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.5 LTS * using session charset: UTF-8 * checking for file ‘topdownrdata/DESCRIPTION’ ... OK * this is package ‘topdownrdata’ version ‘1.26.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... NOTE Found the following non-portable file paths: topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e6_1.experiments.csv.gz topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e6_2.experiments.csv.gz topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e7_1.experiments.csv.gz topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e7_2.experiments.csv.gz topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_5e6_1.experiments.csv.gz topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_5e6_2.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e6_1.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e6_2.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e7_1.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e7_2.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_5e6_1.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_5e6_2.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e6_1.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e6_2.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e7_1.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e7_2.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_5e6_1.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_5e6_2.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e6_1.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e6_2.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e7_1.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e7_2.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_5e6_1.experiments.csv.gz topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_5e6_2.experiments.csv.gz Tarballs are only required to store paths of up to 100 bytes and cannot store those of more than 256 bytes, with restrictions including to 100 bytes for the final component. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for sufficient/correct file permissions ... OK * checking whether package ‘topdownrdata’ can be installed ... OK * checking installed package size ... NOTE installed size is 103.0Mb sub-directories of 1Mb or more: extdata 102.9Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.19-data-experiment/meat/topdownrdata.Rcheck/00check.log’ for details.