############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:dressCheck.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings dressCheck_0.42.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/dressCheck.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.5 LTS * using session charset: UTF-8 * checking for file ‘dressCheck/DESCRIPTION’ ... OK * this is package ‘dressCheck’ version ‘0.42.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘dressCheck’ can be installed ... OK * checking installed package size ... NOTE installed size is 65.8Mb sub-directories of 1Mb or more: data 54.4Mb sampleRemap 11.2Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... NOTE prepare_Rd: DrAsGiven.Rd:69-71: Dropping empty section \details prepare_Rd: DrAsGiven.Rd:72-74: Dropping empty section \source prepare_Rd: DrAsGiven.Rd:75-77: Dropping empty section \references prepare_Rd: E2F3sig.probes.Rd:16-18: Dropping empty section \details prepare_Rd: E2F3sig.probes.Rd:19-21: Dropping empty section \source prepare_Rd: E2F3sig.probes.Rd:22-24: Dropping empty section \references prepare_Rd: Src.probes.Rd:17-19: Dropping empty section \details prepare_Rd: Src.probes.Rd:20-22: Dropping empty section \source prepare_Rd: Src.probes.Rd:23-25: Dropping empty section \references prepare_Rd: c119.Rd:97-99: Dropping empty section \source prepare_Rd: c119.Rd:100-102: Dropping empty section \references prepare_Rd: corrp116.Rd:71-73: Dropping empty section \details prepare_Rd: corrp116.Rd:74-76: Dropping empty section \source prepare_Rd: corrp116.Rd:77-79: Dropping empty section \references prepare_Rd: e2f3Wts.Rd:19-21: Dropping empty section \details prepare_Rd: e2f3Wts.Rd:22-24: Dropping empty section \source prepare_Rd: e2f3Wts.Rd:25-27: Dropping empty section \references prepare_Rd: platsigprobes.Rd:17-19: Dropping empty section \details prepare_Rd: platsigprobes.Rd:20-22: Dropping empty section \source prepare_Rd: platsigprobes.Rd:23-25: Dropping empty section \references prepare_Rd: pwLines.Rd:127-129: Dropping empty section \details prepare_Rd: pwLines.Rd:130-132: Dropping empty section \source prepare_Rd: pwLines.Rd:133-135: Dropping empty section \references prepare_Rd: srcWts.Rd:19-21: Dropping empty section \details prepare_Rd: srcWts.Rd:22-24: Dropping empty section \source prepare_Rd: srcWts.Rd:25-27: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.19-data-experiment/meat/dressCheck.Rcheck/00check.log’ for details.